Bioinformatics for evolutionary biologists / Bernhard Haubold

Public ISBD Titre : Bioinformatics for evolutionary biologists : a problems approach Type de document : texte imprimé Auteurs : Bernhard Haubold, Auteur ; Angelika Börsch-Haubold, Auteur Mention d'édition : 2nd ed. Editeur : Berlin : Springer Année de publication : 2023 Importance : 1 vol. (411 p.) Présentation : ill. en coul. Format : 25 cm ISBN/ISSN/EAN : 978-3-031-20413-5 Note générale : Bibliogr. p. 401-403. Index Langues : Anglais (eng) Catégories : Informatique Mots-clés : Informatique Index. décimale : 570.2 Ouvrages divers en relation avec la biologie Résumé : Discusses fundamental aspects of sequence analysis with special emphasis on evolutionary biology, including sequence alignment, exact matching, phylogeny reconstruction, and coalescent simulation Covers the material exclusively through 810 computer problems to enable learning by doing Offers solutions to all problems to encourage self-study at a pace determined by the student Contains over 50 programs written specifically for this book, which are provided as source code for further study Ensures long-term usability of the course material by concentrating on fundamental concepts and utilizing the standard Unix command line Note de contenu : Sommaire Contents Part I Problems.- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.-1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - Part II Answers. .- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.- 1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - A. Unix Guide.- B. Programs.- B.1 Own.- B.2 Biobox.- B.3 Third-Party. - References. - Index Côte titre : Fs/24991 Bioinformatics for evolutionary biologists : a problems approach [texte imprimé] / Bernhard Haubold, Auteur ; Angelika Börsch-Haubold, Auteur  . -  2nd ed. . - Berlin : Springer, 2023 . - 1 vol. (411 p.) : ill. en coul. ; 25 cm. ISBN : 978-3-031-20413-5 Bibliogr. p. 401-403. Index Langues : Anglais (eng) Catégories : Informatique Mots-clés : Informatique Index. décimale : 570.2 Ouvrages divers en relation avec la biologie Résumé : Discusses fundamental aspects of sequence analysis with special emphasis on evolutionary biology, including sequence alignment, exact matching, phylogeny reconstruction, and coalescent simulation Covers the material exclusively through 810 computer problems to enable learning by doing Offers solutions to all problems to encourage self-study at a pace determined by the student Contains over 50 programs written specifically for this book, which are provided as source code for further study Ensures long-term usability of the course material by concentrating on fundamental concepts and utilizing the standard Unix command line Note de contenu : Sommaire Contents Part I Problems.- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.-1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - Part II Answers. .- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.- 1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - A. Unix Guide.- B. Programs.- B.1 Own.- B.2 Biobox.- B.3 Third-Party. - References. - Index Côte titre : Fs/24991

Exemplaires (1)

Code-barres	Cote	Support	Localisation	Section	Disponibilité
Fs/24991	Fs/24991	Livre	Bibliothéque des sciences	Anglais	Disponible Disponible

Bioinformatics / Ismail D. Hamid

Public ISBD Titre : Bioinformatics : a practical guide to NCBI databases and sequence alignments Type de document : texte imprimé Auteurs : Ismail D. Hamid ; National Center for Biotechnology Information (U.S. Mention d'édition : First edition. Editeur : New York : Taylor & Francis Année de publication : 2022 Importance : 1 vol. (456 p.) Format : 24 cm ISBN/ISSN/EAN : 978-1-03-212369-1 Langues : Anglais (eng) Catégories : Informatique Mots-clés : Informatique Index. décimale : 570.2 Ouvrages divers en relation avec la biologie Résumé : "Bioinformatics: A Practical Guide to NCBI Databases and Sequence Alignments provides the basics of bioinformatics and in-depth coverage of NCBI databases, sequence alignment, and NCBI Sequence Local Alignment Search Tool (BLAST). As bioinformatics has become essential for life sciences, the book has been written specifically to address the need of a large audience including undergraduates, graduates, researchers, healthcare professionals, and bioinformatics professors who need to use the NCBI databases, retrieve data from them, and use BLAST to find evolutionarily related sequences, sequence annotation, construction of phylogenetic tree, and the conservative domain of a protein, to name just a few. Technical details of alignment algorithms are explained with a minimum use of mathematical formulas and with graphical illustrations. This is the ideal textbook for bioinformatics courses taken by students of life sciences and for researchers wishing to develop their knowledge of bioinformatics to facilitate their own research"-- Côte titre : Fs/24992 Bioinformatics : a practical guide to NCBI databases and sequence alignments [texte imprimé] / Ismail D. Hamid ; National Center for Biotechnology Information (U.S.  . -  First edition. . - New York : Taylor & Francis, 2022 . - 1 vol. (456 p.) ; 24 cm. ISBN : 978-1-03-212369-1 Langues : Anglais (eng) Catégories : Informatique Mots-clés : Informatique Index. décimale : 570.2 Ouvrages divers en relation avec la biologie Résumé : "Bioinformatics: A Practical Guide to NCBI Databases and Sequence Alignments provides the basics of bioinformatics and in-depth coverage of NCBI databases, sequence alignment, and NCBI Sequence Local Alignment Search Tool (BLAST). As bioinformatics has become essential for life sciences, the book has been written specifically to address the need of a large audience including undergraduates, graduates, researchers, healthcare professionals, and bioinformatics professors who need to use the NCBI databases, retrieve data from them, and use BLAST to find evolutionarily related sequences, sequence annotation, construction of phylogenetic tree, and the conservative domain of a protein, to name just a few. Technical details of alignment algorithms are explained with a minimum use of mathematical formulas and with graphical illustrations. This is the ideal textbook for bioinformatics courses taken by students of life sciences and for researchers wishing to develop their knowledge of bioinformatics to facilitate their own research"-- Côte titre : Fs/24992

Exemplaires (1)

Code-barres	Cote	Support	Localisation	Section	Disponibilité
Fs/24992	Fs/24992	Livre	Bibliothéque des sciences	Anglais	Disponible Disponible

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