Titre :	Bioinformatics for evolutionary biologists : a problems approach
Type de document :	texte imprimé
Auteurs :	Bernhard Haubold, Auteur ; Angelika Börsch-Haubold, Auteur
Mention d'édition :	2nd ed.
Editeur :	Berlin : Springer
Année de publication :	2023
Importance :	1 vol. (411 p.)
Présentation :	ill. en coul.
Format :	25 cm
ISBN/ISSN/EAN :	978-3-031-20413-5
Note générale :	Bibliogr. p. 401-403. Index
Langues :	Anglais (eng)
Catégories :	Informatique
Mots-clés :	Informatique
Index. décimale :	570.2 Ouvrages divers en relation avec la biologie
Résumé :	Discusses fundamental aspects of sequence analysis with special emphasis on evolutionary biology, including sequence alignment, exact matching, phylogeny reconstruction, and coalescent simulation Covers the material exclusively through 810 computer problems to enable learning by doing Offers solutions to all problems to encourage self-study at a pace determined by the student Contains over 50 programs written specifically for this book, which are provided as source code for further study Ensures long-term usability of the course material by concentrating on fundamental concepts and utilizing the standard Unix command line
Note de contenu :	Sommaire Contents Part I Problems.- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.-1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - Part II Answers. .- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.- 1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - A. Unix Guide.- B. Programs.- B.1 Own.- B.2 Biobox.- B.3 Third-Party. - References. - Index
Côte titre :	Fs/24991

Bioinformatics for evolutionary biologists : a problems approach [texte imprimé] / Bernhard Haubold, Auteur ; Angelika Börsch-Haubold, Auteur  . -  2nd ed. . - Berlin : Springer, 2023 . - 1 vol. (411 p.) : ill. en coul. ; 25 cm.
ISBN : 978-3-031-20413-5
Bibliogr. p. 401-403. Index
Langues : Anglais (eng)

Catégories :	Informatique
Mots-clés :	Informatique
Index. décimale :	570.2 Ouvrages divers en relation avec la biologie
Résumé :	Discusses fundamental aspects of sequence analysis with special emphasis on evolutionary biology, including sequence alignment, exact matching, phylogeny reconstruction, and coalescent simulation Covers the material exclusively through 810 computer problems to enable learning by doing Offers solutions to all problems to encourage self-study at a pace determined by the student Contains over 50 programs written specifically for this book, which are provided as source code for further study Ensures long-term usability of the course material by concentrating on fundamental concepts and utilizing the standard Unix command line
Note de contenu :	Sommaire Contents Part I Problems.- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.-1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - Part II Answers. .- 1 The Unix Command Line.- 1.1 Getting Started.- 1.2 Files, Directories, and Programs.- 1.3 Scripts.- 2 Optimal Alignment.- 2.1 Keeping Score.- 2.2 Construction.- 2.3 Application.- 3 Exact Matching.- 3.1 Keyword Trees.- 3.2 Suffix Trees.- 3.3 Suffix Arrays.- 3.4 Text Compression.- 4 Fast Alignment.- 4.1 Global.- 4.2 Local.- 4.3 Glocal.- 4.4 Assembly.- 4.5 Multiple Sequences.- 5 Evolution Between Species: Phylogeny.- 5.1 Trees of Life.- 5.2 Rooted Trees.- 5.3 Unrooted Trees.- 6 Evolution within Populations.- 6.1 Descent from One or Two Parents.- 6.2 The Coalescent.- 7 Interrogating and Storing Data.- 7.1 Statistics.- 7.2 Relational Databases. - A. Unix Guide.- B. Programs.- B.1 Own.- B.2 Biobox.- B.3 Third-Party. - References. - Index
Côte titre :	Fs/24991